Kamijo fights Accelerator to gain a better life for Mikoto and her clones. When the battle ends, Misaka 10032 visits Kamijo in the hospital to discuss the steps that must be taken for the clones to adapt to life in Academy City.

As Prince Arslan and his small company bide their time, the Lusitanian army continues to lay siege to Ecbatana.

Kamijo learns that thousands of Mikoto clones were created for one simple, violent reason. Now that her look-alikes are dying off, the real Mikoto vows to save the rest of her doppelgangers by making the ultimate sacrifice.

Now that Narsus has agreed to join Prince Arslan, they must figure out a way to get to Ecbatana without getting caught by Kharlan. And in the meantime, the Lusitanian army closes in on the Royal Capital.

Kamijo senses something odd about the relationship shared by Mikoto and Misaka, who appears to be Mikoto’s twin. Later, after a friendly meeting with Kamijo, Misaka has a much more intense encounter with Accelerator.

Prince Arslan and Daryun seek refuge with Narsus deep in the mountains. Narsus's obvious gift for strategy would be an asset to Arslan, but Narsus is intent on remaining a hermit and dedicating his life to his questionable art.

Kamijo and Stiyl quickly fall under attack after infiltrating Misawa Prep School! During the raid, Kamijo runs into the girl they hoped to rescue – but there’s a chance she isn’t interested in leaving the campus!

Daryun finds Prince Arslan in time to save him from Kharlan's betrayal, but Kharlan's treachery runs deep, affecting the course of battle even where he is not present.

Kamijo succeeds in eliminating the magical threat to Index’s life. Unfortunately, his memory is erased in the process! Later, Stiyl’s boss orders him to work with Kamijo. Their assignment: Find “Deep Blood.”

Three years later, Arslan is still training and still sheltered. Peace seems a certainty for the Kingdom of Pars, widely known for its mighty army. But Lusitania is suddenly back and this time, the Kingdom of Maryam falls and Pars faces war.

Kaori Kanzaki confronts Kamijo, demanding that he hand over Index. Kamijo is wounded in the ensuing scuffle – and when he wakes up a few days later, Index offers to take drastic measures to protect him from further harm.

Crown Prince Arslan leads a sheltered life, but his curiosity leads him to seek out slaves recently brought back from a successful military campaign. When one of those slaves escapes and takes him hostage, he gets more than he bargained for.

Innocentius (The Witch Hunter King)

A look back on how far Arslan has come, from when he was nearly killed by Kharlan to reaching Peshawar, and how far he has yet to go.

With the arrival of Étoile and Merlane, Arslan learns of the situation in Ecbatana. And while he is still far short of amassing an army of 50 thousand, he must decide whether to act upon this information or not.

Kamijo, Index and Kazakiri join forces to take on Ellis. When the battle ends, and with the support of Index, Kazakiri returns to the place of her origin. Later, Tsuchimikado ponders Aleister’s role in recent events.