The British Army marches on St. Paul's Cathedral, Twilight's base. As a diversionary force, Lupin and the others have infiltrated the cathedral, but waiting inside is Aleister, Van's former superior.

Haruto ends up in the dreams of an ailing high school girl, whom he befriends, and takes her beyond the confines of the park near her home.

A small country lies surrounded by mountains. Blessed with beautiful forests, the country is still very poorly rated by travelers. The rumors were so bad they drew Kino's interest, who decides to visit the country with Hermes.

Haruto finds himself in a dream world with a talking cat and a witch whose games turn violent.

Finis has taken over London through a coup d'état as he moves forward with the Code: Realize plan. Meanwhile, Saint appears before Cardia and identifies himself as a member of Idea.

Along with Marie's old school friend, Houko Hoshinomiya, Naoto and the others observe the coup d'etat when they get a report that the Japanese government is going to use the Tall Wand against the Yatsukahagi. As the time draws close to the impact of t...

On top of a mountain, an old bandit stands on lookout with a teenage boy. Together, they carefully size up their prey: a dark-haired man in a buggy with a girl and a dog, a single rider on a motorrad, and... In addition, Kino drinks tea and makes a meal.

In order to fix RyuZU and Halter who were rendered immobile due to the electromagnetic attack, Naoto and Marie head to the Ueno Grid to meet Konrad. There, Vermouth tells them the true aim of the Yatsukahagi. Will they be able to repair RyuZu and Halte...

Van and the rest are searching for Cardia in London when an explosion suddenly breaks out. Isaac's terrorist plot has begun. A coup d'état also begins from within the British Army, endangering Queen Victoria.

In order to save the people from the giant weapon, Naoto and Marie become terrorists and take over the Akihabara Grid. In the now empty city, the army clashes with the giant weapon while RyuZU faces off with her weaponized sister AnchoR...

Shizu begins his journey in search of a permanent residence along with Riku and Ti. After their group arrives at a country with stable order and a good economy, they take their time surveying the nation.

While Marie and Naoto managed to foil the plan of the Kyoto Grid purge, they did not find RyuZU's sister AnchoR. Marie was going about her day when an illegal shortwave radio transmission reaches her. Behind the inflammatory content aimed at Marie, the...

After learning that she's a homonculus, Cardia runs away from the mansion without telling Lupin and the others.

Marie has a chance encounter with RyuZU, who she thought was broken all this time. When she finds out that it was Naoto who repaired her, Marie asks for his help to prevent the purge of the Kyoto Grid. On their way to the Core Tower, Marie finds out w...

Kino tells Hermes a story.

It's been 1000 years since Earth has died and been reborn as the Clockwork Planet. One day, in Kyoto, a black box nearly crushes Naoto Miura, a nerd who surrounds himself with clocks and gears. Inside that box is a beautiful automaton called RyuZU. ...